NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071351_1058178

Scaffold Ga0071351_1058178


Overview

Basic Information
Taxon OID3300005044 Open in IMG/M
Scaffold IDGa0071351_1058178 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)2.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026798Metagenome / Metatranscriptome196N
F073066Metagenome / Metatranscriptome120N
F085120Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0071351_10581781F073066N/AMEEDLRKIHLESLLNNLEDSDKDKKIEICNIMKEMVKEEIEQAKRNQNDDMTHFLNKLKELLEKTINRYSK*
Ga0071351_10581782F085120N/ALNRTLTKKVKKIQLEKTMKNQARIIQLLNRLENMLKIEIEKARTDQDKDAIKLLDKLYNLVKKTEVNYSAQKH*
Ga0071351_10581784F026798N/AMNKSKEKSISHNCTEISSKSKKANNVNIDKVIDENNQLTTIEKLALRRGIERVNRRRDSQQAKIIKMVNSIDVKQNFQDMNNQLKLQILFNTVLKLKRIYPSKSAMWKAPNNNTTN*
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