Basic Information | |
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Taxon OID | 3300005045 Open in IMG/M |
Scaffold ID | Ga0071328_135494 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Chicago |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8194 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Fox Tunnel, Fairbanks, Alaska, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Fairbanks, Alaska, USA | |||||||
Coordinates | Lat. (o) | 64.953 | Long. (o) | -147.615 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F093433 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0071328_1354949 | F093433 | AGGAGG | VHEEHQGGRPPRERQAALTPLPLRLLLIGRVKPGAETALRETQARFPCDAAIEAGIEAIEAYIGSGHYAVELEIGGDDVQRILATFFNDRRVREFRNEIAPMVEGLPGPEYQFGPADRFHADASDAVGGEQPPQTIYNTGDLPFAASMYRWRVGEPPQTGRVPHSRTEM* |
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