NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068511_1011393

Scaffold Ga0068511_1011393


Overview

Basic Information
Taxon OID3300005057 Open in IMG/M
Scaffold IDGa0068511_1011393 Open in IMG/M
Source Dataset NameMarine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1183
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameEast Sea, Korea
CoordinatesLat. (o)37.0Long. (o)131.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0068511_10113932F027536GGAGMQVIPKVTPIDRVINDCKRRADDAWWDGNDEEARLHEQEQKLYEQDKEEGILWVPNF*
Ga0068511_10113933F029123AGGAMSYEVWFGQNGKWFGYHSFKYKMDAQRYEERYQKVFPDLTVEIRERVHASYT*
Ga0068511_10113934F006217AGAAGGMIELLLAMVEEQNIITKYCMEKHEHWTGRAACVQELRHAQRKMEVEELRQFLKENPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGSDKQKKGRC*
Ga0068511_10113935F005813GAGGMRLYKNSNGVWAGTQADARKYCGKDYTTVDVPTDKPNLLGFLNLNQVGSLASSPALEEVRTGEPNKEAMSWFRWAYDCMCRGQYDDAKEMLKKGLTDDRTTTSDG*
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