NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068511_1043723

Scaffold Ga0068511_1043723


Overview

Basic Information
Taxon OID3300005057 Open in IMG/M
Scaffold IDGa0068511_1043723 Open in IMG/M
Source Dataset NameMarine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)721
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameEast Sea, Korea
CoordinatesLat. (o)37.0Long. (o)131.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F037237Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0068511_10437231F003693N/ATALIDISADASNSLGVKTDGMLLCGIQFPAAMTGSAITFDFALDNSTWVDVKETDGTDTSYTVSAGDVLRVDPSGWAFASNGYIRITSDGTEAADRSIILHFRHS*
Ga0068511_10437232F037237AGGAGMSTTIGDLVDRTFREYLEPMDDIVSYTTLTGAINDTATSVAYNGDLLSVEEEDALDAGAIIEIGQELMICTDLNAVANTITVTRGARGTTAASHSIGDLIKIAPPFPRKVVFDAVKDQINNLFPTLFAVET
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