Scaffold Ga0071350

Basic Information
Taxon OID	3300005069 Open in IMG/M
Scaffold ID	Ga0071350_1000004 Open in IMG/M
Source Dataset Name	Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005069 Open in IMG/M

Scaffold ID

Ga0071350_1000004 Open in IMG/M

Source Dataset Name

Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40619
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (86.89%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

40619

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (86.89%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	-77.611214	Long. (^o)	163.119356	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Fryxell, Antarctica

Coordinates

Lat. (^o)

-77.611214

Long. (^o)

163.119356

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017454	Metagenome / Metatranscriptome	240	Y
F029387	Metagenome / Metatranscriptome	188	Y
F054788	Metagenome / Metatranscriptome	139	Y
F060847	Metagenome / Metatranscriptome	132	Y
F062686	Metagenome / Metatranscriptome	130	Y
F073460	Metagenome / Metatranscriptome	120	N
F074788	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_100000415	F073460	GGAGG	MLQSINAIANALICLGGLAFYVMLFTKIGDGVKQIDQFGKVSYHLIRTGLAFIVAGALFNVLLLTTPPASEVLMNLGFGLVLSWAAVWHGKKFGVITGVKAIDRKTGTYRVPQ*
Ga0071350_100000425	F029387	GGAG	MARERLADAQPRMDGGLNSVSDDISLQPNQLRQTVNMRLTDYGAASKRGGTQRTSTAALAAASVLNGYTFQQDSGTNQILAISNTDLFTTTYGAFPLTYTNQGGTFSTTVAPDFAQFRDGSGTDVVYIADGGLLNKWTGTTLTSDIAGTVAVDTIQVHNQRLWGCGNSSFPDSIFYSSLNNGDDLGNATPPAGGGQIIVRTFGDERIVGLASVNTSLLIFHRRGISRLTGYGQDDIVAAPAGLTADVGTIAAKSIVANNNIAYFISERGLYRCNESEVAAVGTPTKPDPILPIIRQLSSSDFDKIRAVINRATKELWITIPGYGCYQYHTVLDAWSGPWNGAYISPDTTALFETINTSGLPVVLRGDASGWVSLCDAPGVNKDNVAAAGTGGDVYTMVAQFHRQYMGDPALAKALRWGYLTAQLNGSQSCSVSWTTDEATGAYQLPTNTGGVWSTSATWGTGAWSGPKSRNFRVPMGGTGYFLDVTITDAGTALPVFSQWQTETFALGRR*
Ga0071350_100000426	F054788	N/A	VAVTKAQLIALTRETMDAVASDRWSDATITTVLSSVYGDEWSNILNAQPYYTFAKRTVTTDGDGMVSFSALSSGSGDSQQNFYRVLSVSDGNVLYTQTRFQDVPLATTTNYLPTYPRLFYTAGQALQILPVAASTTLYVYVNYKPTAFNQLATDSSVIDFPDGGELILANEAGASLLNKGGAESGAARVLREEAQLSRTLLLDDLRRYTIQPTMMAYPDQKYDWSGG*
Ga0071350_100000427	F060847	AGGAG	VTVLLNAAGQPEPPTHVVARLRALHAGLFMKFLEQTGEHWAICLRWSPEDTRWEWVQRGETDPEMAYDIIGYLPMLCSIDEAPAYLERTFRQYPKDEVRRMADFVEQFNATQPIGQAADAALTEVLDTL*
Ga0071350_100000432	F062686	GGA	VSLVIHSLWAAVAVYFVHTAAGVVREFKAAPVAPVLPPPVEIPEDLVAVANQEREPWAQEEVLRSIRERYEDLRDWNRVRSAFGVGRIG*
Ga0071350_100000458	F074788	N/A	MPSPRWDDPESFGPHLPKDYNARGVFAEGPQPPSNPLGRLQSGRGADAGRQALPANVARVVLSREGRSRGRLKLALFVHKPKPPARAVITSVHNDPTE*
Ga0071350_100000461	F017454	GGAGG	MSHNIDLPRHRYVHVIEAAVHRGGAKDKTIPCVWWGMSATPGRMFGCHILLESGAMVVDLPLHALRHQADATQLWTCDKAQRWDAYGWHVEAHEPAYLTGLDCRVLTDDHKHVAYLGELWFLLDHVSDGYSLEPAQHKHHWVVALDDGTFTCVPQDQVIVTEKSFTKFGGIPPIKRQTRVWSCE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0071350_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences