Basic Information | |
---|---|
Taxon OID | 3300005069 Open in IMG/M |
Scaffold ID | Ga0071350_1011490 Open in IMG/M |
Source Dataset Name | Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2072 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Fryxell, Antarctica | |||||||
Coordinates | Lat. (o) | -77.611214 | Long. (o) | 163.119356 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004231 | Metagenome | 447 | Y |
F015570 | Metagenome | 253 | Y |
F024504 | Metagenome | 205 | N |
F029673 | Metagenome | 187 | N |
F032957 | Metagenome | 178 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0071350_10114902 | F004231 | AGGAG | MSVKPKDFQHEICVYLEGFGEGLVCFDILSPGDELDADHSDDYEIDFAVFDEQDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCFD* |
Ga0071350_10114903 | F029673 | GGAG | LTKAEMIQHLRMAACNENTVTGMANAFDLGAEHERDVIASIIFNMVKEQHLAQNIVDTIRVRE* |
Ga0071350_10114904 | F015570 | AGG | MNDKLDQAFDLLDFDVTDQIRNMAYLAEQRKVATGVTDGTVQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS* |
Ga0071350_10114905 | F024504 | AGGAG | VNRKPIGVNAPYRKPDFTFQDMLLDRIKVLEALVVKLEQRIKVLEGK* |
Ga0071350_10114908 | F032957 | AGGAG | MDEFNPTTRMFPRTLQEAFPKDYVNENIFEGAYYSAPHINDVWVLFGLITVISMVSVALWRYF* |
⦗Top⦘ |