NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071350_1011490

Scaffold Ga0071350_1011490


Overview

Basic Information
Taxon OID3300005069 Open in IMG/M
Scaffold IDGa0071350_1011490 Open in IMG/M
Source Dataset NameMetagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2072
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.611214Long. (o)163.119356Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F015570Metagenome253Y
F024504Metagenome205N
F029673Metagenome187N
F032957Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0071350_10114902F004231AGGAGMSVKPKDFQHEICVYLEGFGEGLVCFDILSPGDELDADHSDDYEIDFAVFDEQDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCFD*
Ga0071350_10114903F029673GGAGLTKAEMIQHLRMAACNENTVTGMANAFDLGAEHERDVIASIIFNMVKEQHLAQNIVDTIRVRE*
Ga0071350_10114904F015570AGGMNDKLDQAFDLLDFDVTDQIRNMAYLAEQRKVATGVTDGTVQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS*
Ga0071350_10114905F024504AGGAGVNRKPIGVNAPYRKPDFTFQDMLLDRIKVLEALVVKLEQRIKVLEGK*
Ga0071350_10114908F032957AGGAGMDEFNPTTRMFPRTLQEAFPKDYVNENIFEGAYYSAPHINDVWVLFGLITVISMVSVALWRYF*
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