NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071350_1045285

Scaffold Ga0071350_1045285


Overview

Basic Information
Taxon OID3300005069 Open in IMG/M
Scaffold IDGa0071350_1045285 Open in IMG/M
Source Dataset NameMetagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1672
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.611214Long. (o)163.119356Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F002598Metagenome / Metatranscriptome544Y
F004840Metagenome / Metatranscriptome421Y
F006744Metagenome / Metatranscriptome365Y
F097310Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0071350_10452851F001562GGGGGMNKSQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELENE*
Ga0071350_10452852F002598AGAAGGMATKLYTIESLLVGTNSRHFSGEIVSAEHRPEIYYGEKTEAYLIEVRAGGLRNKFATIAVKVGE*
Ga0071350_10452853F000447AGGMGYIEIFRMDNEGAGWVDLSEATPDELFNIELGLLEEGAFE*
Ga0071350_10452854F006744AGGMNLDEFKKHVLATREASRAEALSVLSATITTSTNERENLNG*
Ga0071350_10452855F097310GGAMAKMKQLLDEIINCDLCNGKGWQFFGNATEYDVEACECNPNELEVNY*
Ga0071350_10452857F004840GGAMYKITCAYDSNAPHWSAEYENEFGAWENFFLFTDWGMANEYSTVNIYTPTGKCYTKVFYRSGMVAVK*
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