Scaffold Ga0071350_1053909

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071350_1053909

Scaffold Ga0071350_1053909

Overview

Basic Information
Taxon OID	3300005069 Open in IMG/M
Scaffold ID	Ga0071350_1053909 Open in IMG/M
Source Dataset Name	Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1144
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	-77.611214	Long. (^o)	163.119356	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055422	Metagenome / Metatranscriptome	138	N
F062460	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10539093	F055422	GAG	MNNWRFRRRTFPLTRKEAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLRRFFPEWGVSMQPHHLRNANPTNRNRNPPDMNRDPSDTDNYSETEPLITEV*
Ga0071350_10539094	F062460	N/A	MNLEKSIIEAVTTAVREIRQESCIEKQVKSLMKIYDAIVVKDKEISTKGSLKTARKRKRSISHE*

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