Scaffold Ga0070431_1015350

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070431_1015350

Scaffold Ga0070431_1015350

Overview

Basic Information
Taxon OID	3300005074 Open in IMG/M
Scaffold ID	Ga0070431_1015350 Open in IMG/M
Source Dataset Name	Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Utah
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4427
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location
Location Name	Guam
Coordinates	Lat. (^o)	13.4388546	Long. (^o)	144.8224773	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023046	Metagenome / Metatranscriptome	211	Y
F035204	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070431_101535011	F023046	N/A	FPEFKARFSATAGWHFSRDLTRHLQLVGVVTVTYLLSMGEITSGSSFEPKNLAEQKLG*
Ga0070431_10153503	F035204	N/A	MLPCKPAFQVIELGYDGENLEMLPMESTVLSLHYIIHIIGFHMNLMRPD*

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