Scaffold Ga0071116_1000022

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071116_1000022

Scaffold Ga0071116_1000022

Overview

Basic Information
Taxon OID	3300005077 Open in IMG/M
Scaffold ID	Ga0071116_1000022 Open in IMG/M
Source Dataset Name	Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Pennsylvania State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	141801
Total Scaffold Genes	146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (30.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole → Water Filled Karst Sinkhole Microbial Communities From Little Salt Spring, North Port, Florida

Source Dataset Sampling Location
Location Name	North Port, Florida
Coordinates	Lat. (^o)	27.074722	Long. (^o)	-82.233333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091390	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071116_100002295	F091390	N/A	MTIKTTKSTQSTTIRINQSTKEKIESLDFVRKDTFDQIMLKLIEFYEKNKTKAK*

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