Scaffold Ga0071116_1037939

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071116_1037939

Scaffold Ga0071116_1037939

Overview

Basic Information
Taxon OID	3300005077 Open in IMG/M
Scaffold ID	Ga0071116_1037939 Open in IMG/M
Source Dataset Name	Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Pennsylvania State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3227
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole → Water Filled Karst Sinkhole Microbial Communities From Little Salt Spring, North Port, Florida

Source Dataset Sampling Location
Location Name	North Port, Florida
Coordinates	Lat. (^o)	27.074722	Long. (^o)	-82.233333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069433	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071116_10379394	F069433	AGGAG	MAHKMPPKQCSFNTPAWTDPLLTDLSTKVRKVHIDELRSFLNAEFVRRGLTQASFTDPTITALVTEIRKVHVDELRTELAACKSGRGESGYCPQDSSGCMDFTDAAITALSTEVRGVHFREMMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECQYSLNHYWICASINLPSATAHPYKSASGNPLSTVAWDGYVPWDWCVYTPPGSNWGTCEYSGGHNHSAWNCKCNPYSW*

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