Basic Information | |
---|---|
Taxon OID | 3300005086 Open in IMG/M |
Scaffold ID | Ga0072334_10310094 Open in IMG/M |
Source Dataset Name | Microbial Community from Halfdan Field MHDA3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Shell Corporation |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1765 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | North Sea, Denmark | |||||||
Coordinates | Lat. (o) | 55.49 | Long. (o) | 7.42 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006728 | Metagenome / Metatranscriptome | 366 | Y |
F008731 | Metagenome / Metatranscriptome | 329 | Y |
F037990 | Metagenome | 167 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0072334_103100942 | F037990 | AGAAGG | MKFDKPTARKIREAMQEALENAGIHGVSINVGNCSFTDGEATYKVKVLIDGAKSRDEQALEQMASLMGFDTSKIASLQGMKVSLVSYNSRARKRPWVVQDLTTAQKYIIDDDTAKRLFGAEEKV* |
Ga0072334_103100943 | F006728 | AGG | MTKLDFNNIVVRHNGRTISIAQHWSRTSEGDFLNAQEVADIDDLHHCEDYDPIRFDDTVDGLINALQAIKKDIDL* |
Ga0072334_103100944 | F008731 | AGGAG | MFVLFATKPLNDGTQGFRFNFAGIKGLTRKRKHASRGYKVTRNDCMNAVHLGKRTVYIERKPNRNTERKLCHFAG* |
⦗Top⦘ |