NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072334_10410564

Scaffold Ga0072334_10410564


Overview

Basic Information
Taxon OID3300005086 Open in IMG/M
Scaffold IDGa0072334_10410564 Open in IMG/M
Source Dataset NameMicrobial Community from Halfdan Field MHDA3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2363
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameNorth Sea, Denmark
CoordinatesLat. (o)55.49Long. (o)7.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F003678Metagenome / Metatranscriptome474Y
F036730Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0072334_104105641F036730GGAGGMAQEFTINSTAIEDKINQLLPSQGGYGAGIDFSASTMVMPIVDLTEAATGSSLRVDLQSSLSLTSV
Ga0072334_104105642F000613AGGAGMPLVKKRLSIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTVGSATADTTMSFNVNNSEFSKDASVSALVTGEPFGWNGNYAMNDMVTQGAVRNRPVITFTNGTSGTRVVDVAVFIGG*
Ga0072334_104105644F003678N/AMNQFMLYAPLILASIALILCLFACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMLQLMQRQPNQQMNGGIQHNNKNIGG*
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