Scaffold Ga0072334_10414532

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0072334_10414532

Scaffold Ga0072334_10414532

Overview

Basic Information
Taxon OID	3300005086 Open in IMG/M
Scaffold ID	Ga0072334_10414532 Open in IMG/M
Source Dataset Name	Microbial Community from Halfdan Field MHDA3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1263
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	North Sea, Denmark
Coordinates	Lat. (^o)	55.49	Long. (^o)	7.42	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008114	Metagenome	339	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072334_104145323	F008114	AGGAG	MNLTINTKAFPDEDPGMLQEMLGVLPYWVGEYILLGRDMDIVGFMTERYGFGSLYEFKGSVSDDGTYSYPEDPDLPYIGKMNTPNGYVYFYQYAMLALPLPNGEYFITRMD*

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