NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072682_133869

Scaffold Ga0072682_133869


Overview

Basic Information
Taxon OID3300005099 Open in IMG/M
Scaffold IDGa0072682_133869 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3731
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location NameGuaymas Basin
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014691Metagenome260N
F017081Metagenome242Y
F040421Metagenome161Y
F056226Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0072682_1338692F056226AGGAGGMRAYDILLFLVCLEASIGFVASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDTATDAFVRAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME*
Ga0072682_1338693F017081GGAGMEERGRKWWWKGVCILGILILFVATAQAIDITEITVTETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGTYIITATFLKPNSTYYVKVCDNENCSDVVSVSVSKEEKLVEQNFTSQFNTLMQGGNLLNISKLGEAIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGIISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR*
Ga0072682_1338695F014691AGGAGGMSKGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSLASTSTIIPTLTSFLPYIALVVILAMAIGVFLSLVRVR*
Ga0072682_1338696F040421GAGGMREESVRAITMLMLAFVIGFKSIILFLQHSFGFAFTLFLLAWTCICLAFPDNLIGASIGQDLKLGEVIEKWERRRELRRK*
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