NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068711_1014822

Scaffold Ga0068711_1014822


Overview

Basic Information
Taxon OID3300005144 Open in IMG/M
Scaffold IDGa0068711_1014822 Open in IMG/M
Source Dataset NameEnrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKM (Arthur Kill Methanogenic) MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2407
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Source Dataset Sampling Location
Location NameUSA: New Jersey, Arthur Kill intertidal strait
CoordinatesLat. (o)40.58Long. (o)-74.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049730Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0068711_10148221F049730N/ASLMKPLSIISLCLEGRGSGWMLRGVAFYNWESYNEWVGRSCMMLEETTLSRREMRGRRTPSMLVLGSFEKLKQDLIPALFRIAGDREIGHIDIRSSPETVDLKRLMGYTLIFVAFEIYRDHESFFRMLPESIQDRITILARPADFPSVTPEIKCACYSSELKALLPREEAQFLHHPAPAKPR*
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