Scaffold Ga0068713_1000632

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068713_1000632

Scaffold Ga0068713_1000632

Overview

Basic Information
Taxon OID	3300005145 Open in IMG/M
Scaffold ID	Ga0068713_1000632 Open in IMG/M
Source Dataset Name	Enrichment culture microbial communities om Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS2 (Arthur Kill Sulfidogenic replicate 2) MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	61204
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (82.76%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Source Dataset Sampling Location
Location Name	USA: New Jersey, Arthur Kill intertidal strait
Coordinates	Lat. (^o)	40.58	Long. (^o)	-74.2	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063816	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068713_10006324	F063816	GAG	MESVELKLRLIDNGEFVVSYTKKIVEMLGEPELSLEVKAGQISEDVSRLIESLGYQIAARKAMDDWIQLKAVKPSK*

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