Scaffold Ga0066823_10000265

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066823_10000265

Scaffold Ga0066823_10000265

Overview

Basic Information
Taxon OID	3300005163 Open in IMG/M
Scaffold ID	Ga0066823_10000265 Open in IMG/M
Source Dataset Name	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5678
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location Name	Laval, Canada
Coordinates	Lat. (^o)	45.54	Long. (^o)	-73.72	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020741	Metagenome / Metatranscriptome	222	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066823_100002657	F020741	GAG	MARRKSPLLCTLLFVLIAQPAAAQGGAFSQSPNRDAGQRAPANGAQIECGPIGCRPLPSGCRQVRLGGRWLDNNGLKVICDRRRS*

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