NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066672_10035902

Scaffold Ga0066672_10035902


Overview

Basic Information
Taxon OID3300005167 Open in IMG/M
Scaffold IDGa0066672_10035902 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2752
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078452Metagenome / Metatranscriptome116N
F097061Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0066672_100359023F097061GGAGGMQRAILVVGLFAFVAERAAAQWLGMPSWNSPKGGRGVGIFADYGQPNADASKGAAYGGRVTFGAGTAMVTVGASSWEPENSSGRVTSWGGSLQARLIGGSLLPVAVNLQVGGAYHGQGTSGTRTLPEASTAQGAVGLSAPLPIPLIRVEPYFSPGVRYHRYWNVPAGARKEETNFGWVLGANVGFDALGIRVAYDSEKFGDGTTHVVIGIGASLEISVPGL*
Ga0066672_100359024F078452GAGGMKRAFLVVAMIVCAAGPVAAQWLGMPVWNSPKGGTGITINGDWGRPDSSFGKGNAFGGRASLGLGTLTLTAGVASYKPENATSSITSYGGNAAMRVIGGSLIPVSINLQVGAARSDSSSPTRPATTSVIGAVGLAISLPTPGLSIEPYVSPGFRYRHASGTGKTNFGYTIGANVSFGMFGIHAAYDYEHVSGGHIGVLGLGANVAIKVPLGM*
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Institute for Fundamental Biomedical Research
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