 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005170 Open in IMG/M |
| Scaffold ID | Ga0071327_1039391 Open in IMG/M |
| Source Dataset Name | Worm MetaG Olavius vacuus BAHAMAS.1 (version 1) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3245 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Marburg | |||||||
| Coordinates | Lat. (o) | 50.8 | Long. (o) | 8.81 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001963 | Metagenome | 610 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0071327_10393916 | F001963 | GGA | MGVTKIRDVVYIVCWLSSTIMRFNARTRQRLTGFFNVKELRQPRDLVVCERTSQLYIAEYNKCVWRVSSDGTDLKHWLPKSPDDTFKPWTLSVTSTRLLVTSRDTSQLRQFDADGDELRRVQLPYHMEPQHAVESPTGTFIIGLYNTQLKQNQVVEVNTGGEVLRQFSGSHLTSLGRTPHVAVDSHGNIFVADQDSRHILLLSAHLSLRRVIIDEHQLNCKPPYRLCYREDTGQLLVGFDYHSRDTNVVCLMCFVV* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |