NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066683_10324594

Scaffold Ga0066683_10324594


Overview

Basic Information
Taxon OID3300005172 Open in IMG/M
Scaffold IDGa0066683_10324594 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)957
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008875Metagenome / Metatranscriptome326Y
F014185Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0066683_103245941F008875GAGGMHKEREENSITRPRETERLNGELEIDYQRNRVMFHPNALREFTFSLPLTPSDVDVVRSLAQITRKLETH
Ga0066683_103245942F014185N/AMSDLSRRGARRRGNSKINAITGVMIVGMTVYPWDNRCSKLVGINIVKISEADYRDYPDLCMKIVVEALLSLPSGSYTVVNHTEPVLCVMDIRLADKGCGLRLRPFDRETINSIKQPACLRVVFG*

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