Basic Information | |
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Taxon OID | 3300005174 Open in IMG/M |
Scaffold ID | Ga0066680_10005154 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6208 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000195 | Metagenome / Metatranscriptome | 1659 | Y |
F001221 | Metagenome / Metatranscriptome | 743 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066680_100051543 | F000195 | AGG | MDLAVTPAQYDAIRGARHLPDVLRSVLDTALRRGDDYLLRLSYEEATALNELCAWNVHTDSSGTVKPESRVFDELVRAILTHPDY* |
Ga0066680_100051545 | F001221 | N/A | VSEPFLKVLTRNTLAALVLGAALLVALPRHGSLGADFVNTFAVAFCFTFLGYYVERMLLALPDIHTGAGPLVRLAGWFAGGLWCYVVARWLWIRFGRDLNELPGLLWGGVVLVMLELVMNTLTRRHDGTSPQ* |
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