NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066680_10301026

Scaffold Ga0066680_10301026


Overview

Basic Information
Taxon OID3300005174 Open in IMG/M
Scaffold IDGa0066680_10301026 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1023
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001036Metagenome / Metatranscriptome796Y
F017355Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0066680_103010261F001036GGAGGMKVRLTLLSLVFAGLVFAAMPAGATQEAAEKKDAPAAQKETQWQGNVIRVNKDKSTLEIHGGAAPSSDLRQVAYDSSTQWTKQGKPGQQDDVKEGSFVILLGH
Ga0066680_103010262F017355AGGAGGMVRKLFTLLFASVLVFGLSAPVFAQESSKPAEGKDVKQDRVEGVVTRSNKDKSTLVVRNRDTNVEKTVQYDSSTQWTSQEHHSKTVNNIDASQVKDDDRVICLGSFDKDGILHATTISKRLTR*
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