NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066679_10033204

Scaffold Ga0066679_10033204


Overview

Basic Information
Taxon OID3300005176 Open in IMG/M
Scaffold IDGa0066679_10033204 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2864
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005548Metagenome / Metatranscriptome397Y
F007088Metagenome / Metatranscriptome358Y
F012379Metagenome / Metatranscriptome281Y
F028238Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0066679_100332041F028238GGAGGMMENPVMPLLVHLSHRDGEHELLVPTEQAPQEELTRFLNRHGPYAQVWIRLASGEYVRYDHIVSIRIQE*
Ga0066679_100332044F012379N/AMVTAAARPHVFWVGEDQERVSSWPIGAALLATLGDINGDVQEALADERTRLSEHGYPEDLPLPALWWNPGRSEKSAADKPLLVAVGA*
Ga0066679_100332046F005548N/AVLRWLLSLFGGGRRDEASSIREAEAYARSYGERTGEIVSVVRQEPKPIPRRTGDMTGELLRRAFEAKLDSRGKAAH*
Ga0066679_100332047F007088N/AMQLFLRDPSYTDRLAAFLTSVGRRAVVGAPDRVDLDEAPEDSQNLELELYLRVWHVAYPDADVELALG*
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