NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066688_10032210

Scaffold Ga0066688_10032210


Overview

Basic Information
Taxon OID3300005178 Open in IMG/M
Scaffold IDGa0066688_10032210 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2911
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003874Metagenome / Metatranscriptome464Y
F028560Metagenome / Metatranscriptome191Y
F029349Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0066688_100322101F029349N/AAIADAYNNASYVLTDDSMGTNPWRLQEARFRNGPNTQLVLLKITRDPAGPLIRGKLWIDDLKLVEK*
Ga0066688_100322103F003874AGGAGGMSLKHLVLAILVTVCILAPQVVAQRNELSGLVGRTFISDQGIKGALSSDPQLRFGNGLTFEVNYARRILDGGFWSLNLEVPFVLNPDEDLHAVQNVVPKQYFSLFVTPAARLNVFPDSGLSPWISFGGGFGHFSESSDLVFGGPNPGNTGTNTGVLQAGVGLDVKIVIRFTLRGEARDFWSGVPQLNVDSGKSRQHNIFVGGGVVWHF*
Ga0066688_100322104F028560N/AASVPQSSAVFPGDLVQTQADSVVRINATGSSVMILSDSLVKFEGNAVSMEHGAVNVATMKGMKTRAGAVVVAPVSDGWTEFEVRDVNGTVEITARKGDVSISDQETTSTLPQGQQTTRNDSEENRKKKKRAGGAIPGATKAALDSPYAIAAGGAAVGGLLLWVLLQGDEPASPAVP*
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