NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066684_10238961

Scaffold Ga0066684_10238961


Overview

Basic Information
Taxon OID3300005179 Open in IMG/M
Scaffold IDGa0066684_10238961 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1188
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051831Metagenome143N
F085430Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0066684_102389611F085430AGGMVAPQLDTEHPGIRVIAEVASVLQAGSASGVALRGVVGALRRGLNLRRCRLWLRTPDGTRYAPVTTPGDEAEL
Ga0066684_102389612F051831AGGAGGVRRSMVTMSAALWALSTPLGAQTRGAWTAGFAGTLGGGWQIEAADIGYARALRAGPLRVASLTARLGSFVDEGAIVGGARGFIFGLTLGGHTGLLSLADLGTETSKSQVGVDLTVEGTAYVGARSPFPEGSPWGALTVLPGLKFGDPDGVQFGLLLGPTWFFGQASDVRPFLGIRFEAPLARRESHP*

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