NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066685_10020787

Scaffold Ga0066685_10020787


Overview

Basic Information
Taxon OID3300005180 Open in IMG/M
Scaffold IDGa0066685_10020787 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3925
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000472Metagenome / Metatranscriptome1100Y
F004117Metagenome / Metatranscriptome452Y
F004347Metagenome / Metatranscriptome442Y
F074645Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0066685_100207873F000472AGGCGGMAKVEEAWTQLATRIPKELHYRLKLHCVMHDIALMYFVTEAVEEKLGRKVRPKKGTS*
Ga0066685_100207876F074645AGGAGGMARGPSVEFGDVFVVRETETALLCRIGDKFHWVARSRLQPGSTVEHPGDLGVLALAWDSAVEFWDGAMSDKRRRPLCDGVRLNGLPCRVARRPGSRFCFSHDATTAREREAAQALGPASSIVRDASPSTS*
Ga0066685_100207877F004117N/AMHLPRHRRHGRADGTLLPLTTTCCISRVAGAFLLFVLLTSPRGSASDPGAAAVDRGPGPASGALTVSVSETPDAVRLHVQASGDVEPGSVEVRFAGRKAVVLARDAEGRAIRSQPLRLPEPVVEEGSSADYYADGALVVTLRKQATAQDAGPTGDPEAAPR*
Ga0066685_100207878F004347AGGAGVQAETASWLNKSRGSFGAAQSRFNDISSMDVTGAGALFMSAEYAMKAVIVEHYGFLPSSFKTHHRIVNLSHLIGLWWQLPPDLRAYLADIAPLDPNVLYPRETRPRDPPRTYETLVSSSSNADWQQRLTTAPRFIQYIERDVIGNPAAFGKLTF*
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