NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066676_10101170

Scaffold Ga0066676_10101170


Overview

Basic Information
Taxon OID3300005186 Open in IMG/M
Scaffold IDGa0066676_10101170 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005908Metagenome / Metatranscriptome386Y
F015313Metagenome / Metatranscriptome255Y
F091787Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0066676_101011702F005908GAGMKPVLQLAAVGLVGIIAWKLAAAFLLPLLFVVFKIGLIVALIMLAFWFFNKKGRGKEDTPPASS*
Ga0066676_101011703F015313AGGAGGMTNWKAVTVALGLALGWIVGNPAVALGPAPVPLAEVQMKVARVEGLTEHLRSNPQDVDEMEHLAALYMANGCYDAAMGPLARALQLDPRRRSLWVALDKTLRHMGRERISDEELVLRAAEFRNALTQ*
Ga0066676_101011704F091787N/AADSSRVFAAAADSNGCPVAFFGHLKISNVKPHGGLTASLSPVVRATVTVELSVWLVNTRTGGIMWRKSSASTEEVGGVSISGGLASFSARDPNDAYGRLINQLVYDVTYDVRSTWVDQ*
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