Scaffold Ga0073162_1000710

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073162_1000710

Scaffold Ga0073162_1000710

Overview

Basic Information
Taxon OID	3300005196 Open in IMG/M
Scaffold ID	Ga0073162_1000710 Open in IMG/M
Source Dataset Name	E2 T6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Alicante
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4045
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Halomarina → unclassified Halomarina → Halomarina sp. BND7	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Mallorca 2014 E2

Source Dataset Sampling Location
Location Name	Salinas de Campos (Mallorca)
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080946	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073162_10007105	F080946	AGG	VLATNYHHLATTNAPRRCGGCGAAATVYDHDLGFRCSDCGDYPDGRRPPDNG*

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