NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066636_10090192

Scaffold Ga0066636_10090192


Overview

Basic Information
Taxon OID3300005236 Open in IMG/M
Scaffold IDGa0066636_10090192 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1565
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010381Metagenome / Metatranscriptome304Y
F049413Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0066636_100901923F049413N/AMVQTVRSVTILAGEKILMIEKPLALHRIFFSIQAFADQTTWLESKISFDDPLFGSFYVLDGSARYFEAKGEDIFQGDIWVYNVSNTNLLHSATEILV*
Ga0066636_100901924F010381N/AFFIQNHTFFSALKYINLKLSEISNDPQFIANASLKSNTLTEVKNACEMLCENAIIRSVTITADD*

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