NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066636_10124120

Scaffold Ga0066636_10124120


Overview

Basic Information
Taxon OID3300005236 Open in IMG/M
Scaffold IDGa0066636_10124120 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1258
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002777Metagenome530Y
F048766Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0066636_101241201F002777N/AMAKNVSVDTKSTQENISMHTEIMAKRIMQKMNEIGHKTYALKKKQNAFYAEALKEARRSTEFPGTDKLREMTYDKFEKEWKEIDDGKDEVDWLIHRLYISIEDEE
Ga0066636_101241203F048766N/AMKNNKIKKQRNKETEEDKKIIDIVCKLGGCEKEKNNQNI*

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