Basic Information | |
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Taxon OID | 3300005237 Open in IMG/M |
Scaffold ID | Ga0066644_10065255 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from aquifer - Crystal Geyser CG15_big_fil_post_rev_8/21/14_0.20 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1105 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Utah: Grand County | |||||||
Coordinates | Lat. (o) | 38.9383 | Long. (o) | -110.1342 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012423 | Metagenome / Metatranscriptome | 280 | Y |
F057887 | Metagenome / Metatranscriptome | 135 | N |
Protein ID | Family | RBS | Sequence |
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Ga0066644_100652551 | F057887 | GGA | LLAATIAPNLSFSDIIYDDLKVYRDEEGNEYVFDDLGNAYLVSRPWNPTEPIIFLSIDTEKEYEYNTNTYSFVDKPIVYTAGLGVFKLFSKILKKLKNITSTTRVASVLARIKNIRTGKKILYFNRKKGIWTAARDVSFLSLVYFGLSQGGKVATQTVSIAVSLIGLKMFMNFICEEAIQAANMGLF |
Ga0066644_100652552 | F012423 | N/A | MVVTKYKGDNCAIAIGISNNADSTAQNYGLSLCLKDEDGDEYTLTMTGLVGTLLAGGFKKITDTDKIVKNKFYFEKGTTYNYNITATFPEMKEGKVYGQLGIYDGTDEDSAWKAGTTYDHVYNFEKKKFSMSISATWK* |
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