NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073692_1021794

Scaffold Ga0073692_1021794


Overview

Basic Information
Taxon OID3300005238 Open in IMG/M
Scaffold IDGa0073692_1021794 Open in IMG/M
Source Dataset NameMicrobial communities on the surface of aged kaolinite enhanced biochar from soil in Sydney, Australia
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1086
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Biochar

Source Dataset Sampling Location
Location NameSydney
CoordinatesLat. (o)-33.91794Long. (o)151.235369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099854Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0073692_10217941F099854N/AGLVTVACLVLIALSCIAVVRTLERERRLLRKLRAHGGDPVLLRDLTDDELDCAKSLAGAGVLPIEQNRCYVRSAELPVFKRKRVRLALSGGLIALVLAVVVAVLILHR*
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