NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073579_1033358

Scaffold Ga0073579_1033358


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1033358 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1682
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015079Metagenome257Y
F036970Metagenome / Metatranscriptome169Y
F048232Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0073579_10333582F048232N/AMTELPYQERAARIMFLREHRRNLISAFCRVDVEKKEKGFLEQERANVETALEKLDPDGMFPP*
Ga0073579_10333583F015079GAGMVQAQIESIQGKGDWKGQHGTMYQFEVAFNDGTVGEANSKTEDPPYKVGDEVYYEVKSDNERWGKKLKISKTLPPAGGYQNRPPANPNKDKQIIRGMCFKVAGMAWANQYKHKSFELPHEVMVKDVIDLAKKYEQAFNEWMKE*
Ga0073579_10333584F036970N/AMTRFREWFAAVNKAIIAQMAIQKKTQRDLAEELGIHPATMNRKLKDPGLFSTGEFGQVVEALDINLQNIESYGSGTN*
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