Scaffold Ga0073579

Basic Information
Taxon OID	3300005239 Open in IMG/M
Scaffold ID	Ga0073579_1170674 Open in IMG/M
Source Dataset Name	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005239 Open in IMG/M

Scaffold ID

Ga0073579_1170674 Open in IMG/M

Source Dataset Name

Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20791
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (69.70%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

20791

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (69.70%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location Name	Gulf of Maine, USA
Coordinates	Lat. (^o)	43.2393	Long. (^o)	-68.368612	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Maine, USA

Coordinates

Lat. (^o)

43.2393

Long. (^o)

-68.368612

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F004220	Metagenome	448	Y
F005072	Metagenome / Metatranscriptome	413	Y
F008037	Metagenome	340	Y
F011527	Metagenome	290	Y
F016025	Metagenome	250	Y
F024421	Metagenome	206	Y
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_117067423	F008037	GAG	VSQEVAKLDIVYKDACAKKQYSAAVNAIRLKSQLLGFLIEKKEVQHSTLDAMNDDEMSTYLDKIEKDHNIQ*
Ga0073579_117067424	F016025	N/A	MKNLTNKIIENKIALSFREFKDKKILFRLFNNKRDKTKSFFIYENAKNSTTIEKAFNNDYRKIDIEYDTTKNNRFKKVNLLVDINSYLDKSKKXXXXXXXRLSSTSTD*
Ga0073579_117067426	F043623	AGG	MFKRIKKTEDSPCLKEAQSFIKGYVERVVLSTGTLLVDEEATFKKGIKKNKAASFLSTKDGYPEILGPAIFIPHEVKSEWY*
Ga0073579_117067427	F004220	GGA	MVEKDKVDWCYYFKSIDRWIRVCTKDMNEGFSVFTKQTRVKEHYKKMADTGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESNSGHTKMFHKENGNWQQL*
Ga0073579_117067431	F002594	N/A	MAKIPISRLNSAPEEYQANEFNQLIEDLQDIVTILNSTYPKEQNDERERQVWFLGG*
Ga0073579_117067432	F024421	AGGAG	MSEALMEKLNQKMKLEAKWASELLSNGAVTVEMAKISKEVKVVEREIKEEVEHK*
Ga0073579_117067433	F011527	N/A	MLVYFQFRRCGYYAKGLVEADSLDAASKALWAEHVGTFKWEDQTNDMPENANCLTIEEYKYERSSDGKTEPENEARSQVG*
Ga0073579_11706748	F005072	AGG	MERLIQAIKKNIKDHKKELSQNLLSKGVENISEFKRIYGYGQGLDKAFLIINETIEKYKKGDIEDE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073579_1170674

Overview

Ecosystem & Geography

Associated Families

Sequences