NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073579_1189587

Scaffold Ga0073579_1189587


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1189587 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35055
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (70.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005816Metagenome / Metatranscriptome389N
F025510Metagenome / Metatranscriptome201N
F026884Metagenome / Metatranscriptome196N
F087206Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0073579_11895871F087206N/AHIYNEQELEDIQSYVLEQDRKGLLEDEISYISFAYNLHPDDDRDEILEFITESILYEKNVGGLV*
Ga0073579_118958746F025510AGGAMKYIKKAWVWLKQTCTKFLDWVDNLLEPKPVIKKRGRPRKKK*
Ga0073579_118958747F026884AGAAGGMQKLKLKDYLQTMSHPSKIFNIEVIIDDMVYVGKEIRAKDKEAALKIMSIMSGGEVTTQSEIIHLEERMVH*
Ga0073579_11895876F005816AGGAGMDLTNFNVDASSEGKTAVEPGRHVLHWQGEEEALVEGRNNWRGCKMYFEIDGTSIRLNHTFTVGHDNPKFVDSGVKSMLLMAQAMGLKEPPKDTSSAFMGKSVSAELIKDDNGYLKINEDWGKTWQPTNQKAKPVVEDDNIKAGPSEADLDAMGSTVASEDDAPF*
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