Scaffold Ga0073579

Basic Information
Taxon OID	3300005239 Open in IMG/M
Scaffold ID	Ga0073579_1189869 Open in IMG/M
Source Dataset Name	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005239 Open in IMG/M

Scaffold ID

Ga0073579_1189869 Open in IMG/M

Source Dataset Name

Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	55999
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (16.67%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

55999

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (16.67%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location Name	Gulf of Maine, USA
Coordinates	Lat. (^o)	43.2393	Long. (^o)	-68.368612	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Maine, USA

Coordinates

Lat. (^o)

43.2393

Long. (^o)

-68.368612

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F016832	Metagenome / Metatranscriptome	244	Y
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F081203	Metagenome / Metatranscriptome	114	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_118986913	F020903	N/A	MAEQLDIFGFDTDQLEEVKVDNPTTLSEVFNNIAADMVYCLKQSVTKEGLVYKGKLHDSIRMPVKMFGFKMIATLYLADYYDYLNKGVKGIGGTRKSGDKKGQGWVIKAPNSPYQFKKGPKVSHVKAWSKSKGLNEYAVRSSIAHTGIKPRFFFDNCMQQTFYGEAFNRFKTDIRIVSGERIAKGIKEILKK*
Ga0073579_118986915	F029278	N/A	MEITIPTKWSDVTIGNYINLRPVLNSDLQPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPNKLKDKRFKIGGQWYEFKVDARKLLFGEYINSMEILQNAKDDQEAIFNNLHHILTTICRPVKKTIFGWKHIKVDGEILRKTADNFLNNMPITIAYPIGVFFYSHSEDLTKAIKTSLMDQAKKMTREAKKELDLLRDGDGGVH*
Ga0073579_118986919	F043411	AGAAG	MLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVDFK*
Ga0073579_118986923	F056150	GAG	MDKKLIKKIENFILWIGREYNVVELQDFKQDIFMILLNKGEDFIIQLDKENSVKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIDDIETYSNSCFKDQVLKDLINSLQGLDRIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKEKWSLNEFYS*
Ga0073579_118986924	F030436	N/A	MKSTLDRIAEIIKEYKQTDVFDGNSLNKQLKELTAYLYHIETIRTKAHNDFEKVIHNRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVIDAMRTNISFLKSEMYNVTKEY*
Ga0073579_118986927	F038672	N/A	MDELDVILRKNKLDIMIIKASAEVEKTNNKVKKEGLEILMDILELIHDLQHEIREDNRLISKLKYENAVAYKENAILKADFSKYKHQLIKAELETPNKTKKNG*
Ga0073579_118986931	F005706	N/A	VKESSVLKALGLSSLDIQTMLMNGMTMPEIAKKYNIKYIALIQAFKIQKKEFKYIDFKQPKKEVEDIKDVSFTSERLYTEDSLNDNELLAYYKYEQKNHAYYDSQ*
Ga0073579_118986936	F016832	N/A	MSRTINYTTRTFYVPADKLEILIKFQNKCKENGHKSYSEVILKLMEVYNNG*
Ga0073579_118986959	F020903	N/A	MADQLDIFGFDADQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVQKEGLVYKGSLEKSIRMPVKMFGFRMVATLYLADYYDYLNQGVKGIGGVRKSGDRKGQPWDIKAPNSPYQFKKGPSVSHVRQWAKSKGLNEYAVRNSIARTGIRPRYFFDNCMQETFYGQAFDKFKTDIRIVSGERVAKGLKEILKK*
Ga0073579_118986963	F056150	N/A	MDKKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS*
Ga0073579_118986970	F005706	N/A	MKESRVLKALGLSSLDIQNMLTNGMTMPEIAKKYKITYISLVQAFEIQKKNFKYIDYKQPKKEVEDIKPVSSTSERLYTEESLNENELLAFYKYEQKNKAYFDIN*
Ga0073579_118986973	F081203	GGAGG	MDKYEFYYRQKQEWDYWQANQRHNFLSDRLLGIISQVQWNKGILKRTKLSDNDLEIHQNRFSDLITDVVKISIELKELAINYNPKRIKQLIIILTKIKNYNNEPIENS*
Ga0073579_118986974	F016832	N/A	MSRTINYTTRTFYVPAEKLETLIKFQNKCKENGHKSYSEVILKLMEDYNDG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073579_1189869

Overview

Ecosystem & Geography

Associated Families

Sequences