NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073579_1191595

Scaffold Ga0073579_1191595


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1191595 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)176981
Total Scaffold Genes226 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)122 (53.98%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002915Metagenome / Metatranscriptome521Y
F004164Metagenome / Metatranscriptome450Y
F004166Metagenome / Metatranscriptome450N
F006870Metagenome / Metatranscriptome363Y
F007087Metagenome / Metatranscriptome358N
F007392Metagenome / Metatranscriptome352Y
F011736Metagenome / Metatranscriptome287N
F012576Metagenome / Metatranscriptome279Y
F025396Metagenome / Metatranscriptome202N
F042172Metagenome158Y
F043089Metagenome / Metatranscriptome157N
F044735Metagenome / Metatranscriptome154N
F085127Metagenome111N
F088281Metagenome / Metatranscriptome109N
F103883Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0073579_1191595132F042172N/ALIVIKDIGSKSQGASPEYILERVILKVDDNLETVFDFKSLKTDIRKNINKIIDKLSGEQKADSDEEKIDHKKIINNLKDLL*
Ga0073579_1191595150F007392N/AMFFCSLAFSEDFNLICEGERKVRNLSGKKFNVTNFESVLLKINNNAMEYTGVNSRRSYFFSNREYTAPKRPPHEDIKITEQYQYTPNNIKASQMIADTGDSEESSINLFSLDINLMTGKLKEKEIISYKKTNVKSVNNNFQALCKREDRSY*
Ga0073579_1191595157F085127N/AMRTLFLLISFIPSIIFAEDYRILCHGEEIKYIEGDPSTERGAKKIIGIQVYQKGMRVDGEWFDNKTDLTEDYSLERSYIKTKDNINGTRSFTTSALIENKDIQTIKIDKVEIDVLTDKILWRHEFNRVDITNDKAELIYAFRKNFTGSCKKEGGS*
Ga0073579_1191595158F012576N/AMGFIIYGSVITFGDTSTNTSLSGIFAPILAWFSGTGLRASFNGDNKSQRQGSIFMTIIILALSYLWINASGYWYIANGIEISGKNLLVISFFIGFLSTTKTISQIKKY*
Ga0073579_1191595180F011736N/AMIMLLFCNVISANSIDNKSQHSNIEQKAEKNVYEDWEVERYENLVRYSTHGKVVHGHRFGWIKKAGNCDRDILATSLSTQKENKNRLYNFEGDSIDLRVNFPQAEGEDPAIINTDLVGVFDLATLKIAFFGNFVQGRMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGIVKTTSL*
Ga0073579_1191595181F088281AGGAGGMTKEKPSKGHQATEIVRLLVDNRSDEALKLFEKYGFRKEFIGFAMKSGIDYEDARDLVQKFIIDKLCMKSDSIKNIEFARTWMYQVFRNMIHDQGRMLSRNREVPLDENKDQAYEQRTYDKNQALTDCVQEQLKIFREKEPKHAEVVEFILKDLNTEQIRLINRQVDGATREL*
Ga0073579_1191595184F044735GAGGMIKKYLIKSIFIGFAVITLFLVLDHKVDERIAIMQKINHNQAS*
Ga0073579_1191595193F025396AGGMERDRKKFNTGEIPLRIQNILLKFGEKKKIGIAEYLRTFDRLSLQKIAERMGEGAIAEIEYHLDCYLIHSENKKIIITSGQIT*
Ga0073579_1191595195F103883AGGAGGMTKEKQSKRHQATEIIQLFREGRSDEALELFEKYEFRKEFIGFVMKMGINYEDASDMVQKFTIDKLYMQSNSIKNIEFARTWMYSVLTNMVNFGAGF*
Ga0073579_1191595199F044735GGAMIKNYLVKSIIILFAATTLFLVLDQKVDERIAIMQKINNNQTT*
Ga0073579_1191595224F007087AGGMKKLLLIALTIPNFVLADEFKLICEGEESKYRNDVLENTSKISLKLQVRDDSILIDSMTYKSKTFDYGAVKGSSKYVKEDAQIVLETTQVSNDCDTSLLNVKLNRTSGMIETISKRIGTCDGSSFTAATKFKGKCK*
Ga0073579_1191595225F006870N/AMKKINLFFLLLLSFATTTQASSLETKLSPQGADKYNFFITGDADSSEKKLRDIFQNKVNEVCGTRFEIISIKVDHISKEGAKKNILNGTFKCFVNSQM*
Ga0073579_119159545F004166N/AMKTLLLLILVVPLISCSDHQTNDSWGSYATNKETQKQEFWFTSYKTRDECVADMSWQLEGEDDPNKKRISNWHTKPYGCHFMSNNKWLSMYYYLVYRDEGLGCLWESSNPNVRIKYSVTLKTFVNAPEQGRCILGD*
Ga0073579_119159546F002915AGGMRKLLLLLLTIPVIGQSEETFTNEQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICGDKDMVEKLEKKAKEAE*
Ga0073579_119159548F007087AGGMKKLLLIALTIPNFVLAEDFKLVCEGEESTFRNDVLENTSKATRTLQVRDDFIVIDSMTYKSKTFDYGAIKGSSKYVKDDTQIVLETTQVSNECDTALLNVKLNRSSGMIESTSKRIGACDGSSFTTSTKFKGKCK*
Ga0073579_119159566F043089GAGGMTRLDENYLLWLLREIQKSDSLWKDELGYAVKLIQQKKETHL*
Ga0073579_119159577F004164AGGAMAFLKQCLIVISLLLPLSICASEDFKYNYEHDSLGDRDDAGGDVTFRTHKDNKTSFEYAHVNINWKGGFFKSSITDDFIQKKEIKNGLVLYDIVEGNQKKGYSVFARHIQVNNYPVGFETKKIINDEGRHPDFSDYDWIFKFKAERVENLQINGRSHKALFTKLWGSRPTSTTNCQMTQPGMNFSNSMGEIYVETWFDLKDSKLLKQVFTKYGCVPSKRLISKETWTLAN*
Ga0073579_119159588F004164AGGAGMNTLRLIIFLLVLPIMGQATEDLKYSYLHDSIGDRDDAEGDVTFRTHQDNGVMYEYAHVNIKWKGGFFKSSITDDFIQKKEIKNGLVLYDIVEGDQKKGYSVFARHIDVKNYPVGFETKKIINDEGRHPAFSDFDWIFKFKTESVESTEINGRKYQALYSKLWGSRPTSTTNCQMTQPGMNFSTSTGEIHVETWFDLQNNKLLKQVFTKYGCVPSRRLVSKETWVLIN*
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