NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073579_1666518

Scaffold Ga0073579_1666518


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1666518 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2437
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002915Metagenome / Metatranscriptome521Y
F006870Metagenome / Metatranscriptome363Y
F007087Metagenome / Metatranscriptome358N

Sequences

Protein IDFamilyRBSSequence
Ga0073579_16665182F006870AGGVQVTSKLKKTAKSCEPPLFAFLYLINHMKKISLFFLLTLSLVVTSKASSLETKLSPQGSDKYNFHIKGDAKTSEKKLRDVFQNKVNEVCGTRFEIISIKIDHINIEGVKNNVLDGSFKCFVNSQM*
Ga0073579_16665183F007087AGGMKKLLLIALTIPNFVLADEINLVCDGEESNYRNDVLEDTSKTSLKLQVRDDSIVIDSMTYKSKTFDYGAIKGSSKYVKEDNQIVLETTQVSNECDTALLNVKLNRSNGMIESTAKRIGACDGSSFTTSTKFKGKCK*
Ga0073579_16665185F002915AGGMKRLLLLLLIVPIIGQGKEVFTNDQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICSDQHMIKQLEKKAKEAG*
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