NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0068635_1026505

Scaffold Ga0068635_1026505


Overview

Basic Information
Taxon OID3300005250 Open in IMG/M
Scaffold IDGa0068635_1026505 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_T MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1535
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064749Metagenome / Metatranscriptome128N
F079733Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0068635_10265052F079733GGAMNDIIICDKGKVTFTNPDVWHLQNDNWFSEPRSAAQWREDCENELQRLCQSHHWIDVWSLPGDVSLPYDKRLTRVGQWCISRIDASYDDGRLRQLVIFTHFDGRVISETPTYMRGANDRLVKLVPGMEEYDDAWGFDDEGWLFYLEDIPRIWNNLYQRRLINAVTDELLGLSLTMDWQGRLARLIRRLMSEGNYDDAIQVAACASARFEHEEWPGDNRFAVVRKQMMKVLATNEL*
Ga0068635_10265053F064749N/ALDDSFWQQFVRDRRLFFWDTDIILNNLASGLRWFDVTQVATAHRHDNLLIRREAGAFIFDVVQDEIVSTIAMCEWKDGRLCPVPIYSSIKCEVILWEHLIDYWNDVYRQAVYDVYGLYAHGWAYHTLLLVYELFDAGKYDYARETLKSAIARAKMEGDDKLVAKFENLEQQLLAK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.