Scaffold Ga0073583_1288895

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073583_1288895

Scaffold Ga0073583_1288895

Overview

Basic Information
Taxon OID	3300005253 Open in IMG/M
Scaffold ID	Ga0073583_1288895 Open in IMG/M
Source Dataset Name	Marine sediment microbial community near Loki's castle
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Uppsala University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3084
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Community From Loki's Castle, Arctic Ocean

Source Dataset Sampling Location
Location Name	Loki's castle hydrothermal vent
Coordinates	Lat. (^o)	73.763167	Long. (^o)	8.464	Alt. (m)		Depth (m)	.74
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061612	Metagenome / Metatranscriptome	131	Y
F074512	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073583_12888952	F061612	AGAAG	MKLIHEEKMCCGGKRCPTIKIFEDGSVELTDDDTEIGSVGTIKLHPKHLDRIAELIATRK
Ga0073583_12888954	F074512	N/A	MIYIALIGLTLIIVRGTIFGPLQRLWPTFFQCGQCVGMWVGMAAGASDIVTIGHGRVLDAIIVGGVTSILSLLTAAVLLKLDE*

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