Basic Information | |
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Taxon OID | 3300005260 Open in IMG/M |
Scaffold ID | Ga0074072_1000269 Open in IMG/M |
Source Dataset Name | Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Australian Centre for Ecogenomics |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 33928 |
Total Scaffold Genes | 32 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (65.62%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Biochar |
Source Dataset Sampling Location | ||||||||
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Location Name | Sydney | |||||||
Coordinates | Lat. (o) | -33.917926 | Long. (o) | 151.235347 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F060082 | Metagenome | 133 | Y |
F079690 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074072_100026927 | F079690 | N/A | MAEDPAARRARYFLYLLGGVFVALGFALERVPAMAAVAPELAGRVSAGIGAVILSVGRFGSDRLVRRWETVLTGWF* |
Ga0074072_10002693 | F060082 | GGAGG | MELATLRAVKARYTLVLSLLSGLSFFQHASFAAATVDADDALGLCQIETMPKDIRDTLDRRFYGWKVQDSSNLLPKVRQKWAGIAPLACPGIATGHFEDSRSVAYALLLVPVDRSASGYKFVVFSAPSGQSFYGFKILDQAPLNASSFFIHSVAIDRVFDGPLKKQFKPKANDGIVLFYTDDKQPTENVFYWKGDSYDHAQIDYQ* |
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