Scaffold Ga0065697_1004930

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065697_1004930

Scaffold Ga0065697_1004930

Overview

Basic Information
Taxon OID	3300005273 Open in IMG/M
Scaffold ID	Ga0065697_1004930 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1328
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location Name	Deep Lake Antarctica
Coordinates	Lat. (^o)	-68.54	Long. (^o)	78.18	Alt. (m)		Depth (m)	24
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100065	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065697_10049302	F100065	AGG	MTANIVVSKAPFLSPIREPVDAGRTVESIFGDYTGLARDHTRAFVNGYPVDDWNQEVVSGDLLTLHQVPSGLGLAANLAIAALAVSVATFFPLRP*

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