Scaffold Ga0065720_1030944

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065720_1030944

Scaffold Ga0065720_1030944

Overview

Basic Information
Taxon OID	3300005281 Open in IMG/M
Scaffold ID	Ga0065720_1030944 Open in IMG/M
Source Dataset Name	Thermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3281
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Rice-Straw Enriched Compost → Rice-Straw Enriched Compost Microbial Community From Berkeley

Source Dataset Sampling Location
Location Name	Davis, California, USA
Coordinates	Lat. (^o)	38.5402727	Long. (^o)	-121.7500776	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065720_10309444	F001564	N/A	VHWALRREELCDPRLCPDAPEDGGRCDHCPLDKLDAAQSSETGLLIRRALDLRAALKLGIRVSLDEIRADEFYTMLILEEERERLDQERINSHGR*

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