NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065714_10002184

Scaffold Ga0065714_10002184


Overview

Basic Information
Taxon OID3300005288 Open in IMG/M
Scaffold IDGa0065714_10002184 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)284511
Total Scaffold Genes232 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)175 (75.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan State University
CoordinatesLat. (o)42.406189Long. (o)-85.40016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004983Metagenome / Metatranscriptome416Y
F011373Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0065714_100021842F011373AGGAGMKEIIRFVNDESGIETIEYAIIAAIVAAVALLIYGAGWGGSVQNTLKNAAAQSTTATL*
Ga0065714_100021843F011373AGGAGMKEIMNFINDESGIETIEYAIVAAIVAAVALLIYGTGWGGSVQNTLKNAAAKSTTATL*
Ga0065714_1000218481F004983GAGMIQREKIEELLKLPAEERRRVLRLLQESLPQEGEAVAPSTIGDQTSPAAKWLLSMAGRYSGGPGNTAARADEILRAEVDKHRGLTTN*
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