Basic Information | |
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Taxon OID | 3300005289 Open in IMG/M |
Scaffold ID | Ga0065704_10099157 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2323 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | East Lansing, MI | |||||||
Coordinates | Lat. (o) | 42.794771 | Long. (o) | -84.393804 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F036344 | Metagenome / Metatranscriptome | 170 | Y |
F064075 | Metagenome | 129 | N |
Protein ID | Family | RBS | Sequence |
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Ga0065704_100991572 | F036344 | N/A | MRRGDQPAGIARFIVTGGSRYAALSKLRVYYDTSDIDSLTATPISGIIPIAGALVHDMRRATPEAEAPQAHEKPDASDDDEPWKRSA* |
Ga0065704_100991573 | F064075 | N/A | RVGEGVPRCQLHLWAIGAEPAWRTLGGTAKVHLADPPIGAIVSPMRPHTLVTALAVAVLSATTAGAQASTQSGQSAAQSSSPCHRCLNGFRFVPSSVVDEPFTNTSFENATGGGMALNLNVPVRKLDGDTIGTLNGNIGFFLLDFEYQKSVAKWLALRVGVNGIGRLGTSLEALVASGISAAMGGYIGATVPVWSKPNFLISAVADLKNNKQWDVDPYSFAKDVVDSGYNDTTKAVLLSSERVNRWSFGLRGAWAVKPWMGLTANIEPGGADGEVSGNKSLSTFGALAGFDLHKLWDVPISTTLAYRVRTGSGKSGNISGGYRSAQLGVYYNALREVLIGGDFFYSTIRVQGGSIPDLDAIQFRLVTHIDF* |
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