Scaffold Ga0065712_10000602

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065712_10000602

Scaffold Ga0065712_10000602

Overview

Basic Information
Taxon OID	3300005290 Open in IMG/M
Scaffold ID	Ga0065712_10000602 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10673
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan State University
Coordinates	Lat. (^o)	42.406189	Long. (^o)	-85.40016	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005278	Metagenome	406	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065712_100006022	F005278	AGGAG	VFRSRQHTYVLTALAFLIIILAAGSGYGQSTPFHSGQSMYIVAFRTFQFAILCDQPPVXGQRDNINYDLDAERKVRKRIEXWRYFKVAEKVSDADFIFLVRLDGSSMEALAIPIEAYQRYFKDRFDLDALRNAAFGRYIVGPLKLPTLTRLSDRLVKQFREKLGP*

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