NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065712_10069794

Scaffold Ga0065712_10069794


Overview

Basic Information
Taxon OID3300005290 Open in IMG/M
Scaffold IDGa0065712_10069794 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6683
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan State University
CoordinatesLat. (o)42.406189Long. (o)-85.40016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003994Metagenome458Y
F007997Metagenome341Y
F065662Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0065712_100697944F065662N/AMAALPKLSRAYFYRAQNMAISNELSSDVAVAILAKKSSPQELQQLKEVILQVHSALQKMSEETRSDRLSRSSHKKAQKAQNDG*
Ga0065712_100697945F007997N/AMRSRIERKHFSFKLALASACLCLNALSTFAADAPSRIMIKPEISRSHREELIKRLRVITGWSNLTFDSNGALRLGDIPTTGGSESARLLLIEAVAGPNVIVLEDASARTDVAFCRVVRGRWVRDQLNMPPAYVVLIDFKDFQQLSGDAEARAAFDVGWGLLHELDHVVKDSDDARDAKAVGECEDHINRMRLEVGLPVRVDYFFSRAYLKADANFNARYVRLSFARQTKRYWLVWDATTVGGLHSDDQRALVR*
Ga0065712_100697946F003994GAGGMSQRRREREQNFLVQCSWCGSKIRDDKKEEANAVCLKCFYQILSNHLRAQKRTAYGEFVSDR*
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