Basic Information | |
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Taxon OID | 3300005290 Open in IMG/M |
Scaffold ID | Ga0065712_10082518 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2909 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Kellogg Biological Station, Michigan State University | |||||||
Coordinates | Lat. (o) | 42.406189 | Long. (o) | -85.40016 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036290 | Metagenome / Metatranscriptome | 170 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0065712_100825182 | F036290 | GAGG | MDRAVALLLSAVVVVACSNNPTATRDDAADFPLVAHWTATAAPIAPATITGQLTYDQHLGFHSDVTFAVSGPPNGVFQWRIFKRDCTVNVAAVNNTAPTGLVLFATTQSYPDITLDASGKATVKVAIAGWLDSLTAYSVRIRPTATTSFTGVNPASCGNLKYAPAN* |
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