Scaffold Ga0065715_10001171

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065715_10001171

Scaffold Ga0065715_10001171

Overview

Basic Information
Taxon OID	3300005293 Open in IMG/M
Scaffold ID	Ga0065715_10001171 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9435
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan State University
Coordinates	Lat. (^o)	42.406189	Long. (^o)	-85.40016	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F028952	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065715_1000117110	F001033	AGGCGG	MKFVSSIKSMAVLHQILGASTNEKRELPMGGHSLIARLTIAVFVFQMLGVTSVVHAERPDSTAGTSSAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGNYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTGINFTGQAVTHKDGRTHIVLGRATPSSRDRGS
Ga0065715_100011713	F028952	N/A	MYTFTSIAALCRLLEQAYHAGPGETGRTAFVDMLKEKFEFGDDAAQLYAGTVLGSNSDNSAGIVQTNAERLIGTWRATGASSLADLGYGGNALSSRTEEWNFADDLTYTYRLERQTSLMSPYGSIVRPSSTSEGGLWVPPDRTGPQIDILLLPDGADGRKVEVDWLGSNDNRPMECRIDGTRFQRF*

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